rs228584872 SNP Detail

Summary

• ID
  rs228584872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138553411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGTCAA CAGTGAAACA
  TAATGTCCCC AAATTCATAT GAAACTATAA AATGTGGACA AATATGAACA AGTCCTATCA
  GAGCATCTAA GTCCTATGTC TCCAGGCTGG AGAATTCCTG CTCCAACAGT AGCAGCTGGT
  GGATTCCAAG AGGCACATAA TGAAAATATT CCCATGTGGG AAGCATGTTC AAATCCTGCC
  Y
  GTGTTGCCAT CCATGTGGGA GGGGTTCCAC TCTCCTGACT GATGTGTGGG GATTGCAGCT
  GACTTAATGA GGGACTGTCC TAAACAGGGG ACTCTGTGCT CCTTCTTGGA CCCTCCAACT
  GCCCTGTGGG GAACAGTAAA GGGACAACTT GTCAAGATGC CCTGTCCTTT TCTTTTTTTT
  TTTAATTAAA TATATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	LP/J	PL/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss366898826	MGP_WTSI_5_138996377	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	LP/J	PL/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs228584872					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366898826	MGP_WTSI_5_138996377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138553411 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr15	DNA Segment, Chr 5, Derry C. Roopenian 15	1933 bp proximal
D5Mit31	DNA segment, Chr 5, Massachusetts Institute of Technology 31	1825 bp proximal