rs228587338 SNP Detail

Summary

• ID
  rs228587338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135806770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCCTGAA CTTTAGAATA
  GTTATTATTT TTTTAATCGT GTGTTGTGCG GATTTTAGTA AGAAAGGAAG GAAAAGAAGG
  GGGGAGCAGG AAAAGCAAGA AGAAGAGTTG CAGAACCGTG CTCCCTGCAC TGCTGGAGAG
  TTTGAGGGGT AGAGACAAGC CCAAAGCCTG AGGCACGGTC ACCAAACGTT TCTTCCTCCG
  Y
  CCCAGACCTA GGATCGCGGT CCTGCACATC GCCTGGTGCC ATGACAACGC GAGTACTCGC
  TCCTCCGAGC GGGTTGTGTG AGAAGCCTGG AACCTCAACA AGGCTCTGTG TAACTTGTCG
  GAAGGGCGGC TCTGGAGGAA ACAGGTGGGG AGATGCTGCC CACCCCGCCC CGGGACGCCC
  CGGGACCCCA GCCGGCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366842181	MGP_WTSI_5_136253786	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228587338					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366842181	MGP_WTSI_5_136253786	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135806770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	733 bp upstream
Rr367967	regulatory region 367967	324 bp upstream
Rr622430	regulatory region 622430	within coordinates
Rr622431	regulatory region 622431	312 bp proximal
Rr622432	regulatory region 622432	575 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	within coordinates
Tssr49186	transcription start site region 49186	1280 bp downstream
Tssr49187	transcription start site region 49187	549 bp upstream
Tssr49188	transcription start site region 49188	712 bp upstream
Tssr49189	transcription start site region 49189	731 bp upstream
Tssr49190	transcription start site region 49190	758 bp upstream
Tssr49191	transcription start site region 49191	784 bp upstream
Tssr53761	transcription start site region 53761	366 bp downstream
Tssr53762	transcription start site region 53762	424 bp downstream