rs228593758 SNP Detail

Summary

• ID
  rs228593758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87011451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCACTCCC TTCCTTTGAA GCAGAAAAGT
  TCTGTAACTG TTTGGGTCGG ACAGTGTGAG CATAAACTTT TACACATAAG AATATGTTGG
  GCCAGTGTTA ATCCATCAAA CCAGCTGCCT GGAAGAATCA TGGAGTTTTG AGGTTTTGGA
  S
  AACTGGGCTA TTCAATAACC ACACATGGTT GTATAAATTT AAATGTAACT CTATAACCTA
  AGAACTCAGT TCTTCATCTT GTGGTCAGAC AGTGCAGATA GAGATTGCTT CCAGCTTCAC
  GGGAAGTTGG CCTGAGCTAC CTTAGAGATG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772708	CHEV_11_86934127	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228593758					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87011451 () rs orientation: forward

Symbol	Name	Function Class
Gm11491	predicted gene 11491	919 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2	within coordinates
Tssr103910	transcription start site region 103910	955 bp upstream
Tssr109949	transcription start site region 109949	1438 bp downstream