rs228598244 SNP Detail

Summary

• ID
  rs228598244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123062837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCATCTAA GTTAGAGAGA
  AGCCCTAGCA TCTTGGACGG AGATGGTTGG AGCTGCCACT GGCTTGTCCC ATTATGACTC
  ACAAAGACTA TCATCATGTC TATCTCAGGT TATATTTGTT GGACTATGGC TTTTCCTTGT
  CTTAAGTACA GATTAAGTAG ACTAATTAGA AGGCACCAGG AAGATCCAGG TTGTGAAGCA
  K
  CAGACTGCTT GTAATCATGG TGGTCAGTCA GTTGAACGGC ATGGTGCGCT CTCAAAATGT
  GACCATGGAA ACCAAGATGC AGAGTTGTAG GAATACTAAT GAGAGACTGT TCAAAGCAAT
  TCAGGCATCC AGGGGAAACG TGGTAGCAAT TACTATTCAG ATCTGTGCCT GTGAAATTTC
  CTGGGACCCC CGAAATGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359522610	MGP_WTSI_3_122972106	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	G	G	T	T	G	G	T	T	T	T	T	T	T	T	G	T	G	G	G	T	T	G	T	T	T	T	T	G	T	T	G	T	T	T	G	T	T	G	T	G	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228598244					SNP	T	T	T	G	T	T	G	G	T	T	G	G	T	T	T	T	T	T	T	T	G	T	G	G	G	T	T	G	T	T	T	T	T	G	T	T	G	T	T	T	G	T	T	G	T	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359522610	MGP_WTSI_3_122972106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123062837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	976 bp distal
Gm56815	predicted gene, 56815	1834 bp downstream
Gm66521	predicted gene, 66521	1771 bp upstream
Rr77168	regulatory region 77168	236 bp distal
Sec24d	SEC24 homolog D, COPII coat complex component	within coordinates
Tssr31542	transcription start site region 31542	1986 bp downstream
Tssr31543	transcription start site region 31543	1967 bp downstream
Tssr31544	transcription start site region 31544	1688 bp downstream
Tssr31545	transcription start site region 31545	504 bp upstream