rs228600023 SNP Detail

Summary

• ID
  rs228600023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122521660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGCTCTT ACCCACTGAG CCATCTCACC AGCCCCCGAA
  GGAAGAACTC TTAACCACTC AGCCAGAATG AAGTGTCAAT ATGAACTTTG GAGGGAGCGG
  R
  CACAAACAGT TAAGGCCCAA TTTCTAGCTA TTATCCCAGA GTTCAGTTTT AAATCAGGTG
  ACTTCCTGGT AGGAGGAATG TGTAGATATG GGGTGGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320914160	CHEV_3_122430929	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228600023					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122521660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	781 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	1162 bp upstream
Rr584392	regulatory region 584392	457 bp proximal
Rr584393	regulatory region 584393	911 bp proximal
Rr584394	regulatory region 584394	1069 bp proximal
Rr584395	regulatory region 584395	1570 bp proximal
Tssr31509	transcription start site region 31509	933 bp upstream
Tssr31510	transcription start site region 31510	993 bp upstream
Tssr31511	transcription start site region 31511	1108 bp upstream
Tssr31512	transcription start site region 31512	1152 bp upstream
Tssr31513	transcription start site region 31513	1187 bp upstream
Tssr31514	transcription start site region 31514	1698 bp upstream
Tssr31515	transcription start site region 31515	1839 bp upstream
Tssr31516	transcription start site region 31516	1859 bp upstream
Tssr31517	transcription start site region 31517	1907 bp upstream