rs228600162 SNP Detail

Summary

• ID
  rs228600162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107455931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCTGTCTA TCTGGAGCCT CTGTCTGATG
  CATTCAGCTA AAAATACAGC TGGAAATGAA TAATCATATC TGCTCTTTAC AGGCTCAGTA
  GGCACATCAA ATTTCCTACC ACAAGCTTCA TTCACTTGTG CAATCCAGAG TTCCACTTCA
  Y
  CATGGCCTCC ATAGCGGTCG TCAGTTTACC AGAAAAACTG TATATATATG AAAAGTGGAA
  CCATCAGTGC ATGGAAAGGG CTCTCGGTCC TCTGGGCTTT TATGGCATTC CTATAACTCT
  CTTCATTCTC ATCACCATTG CTCTACATGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319886780	CHEV_1_109424778	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228600162					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107455931 () rs orientation: forward

Symbol	Name	Function Class
Gm70772	predicted gene, 70772	1389 bp upstream
Rr416649	regulatory region 416649	1260 bp proximal
Serpinb10	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	826 bp upstream
Tssr8339	transcription start site region 8339	802 bp upstream
Tssr8340	transcription start site region 8340	817 bp upstream