rs228609335 SNP Detail

Summary

• ID
  rs228609335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90980874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGGGT CTTTCCCTCA
  GTCTTTCCGG TGTCTGCCGC AGGGACTGGG TGGTGATTGA TGGCACAGCA GCTTGCTGGC
  CAGGAGCGGT CTGGAGGGGA GGGAGGCGGT TCCGGAGGCT CTGAGGCGGT GCAAGAGGAG
  GAGCGTGGGT GGGGCTACGG AGGAGGAGCT GGGGTCCCGG GTAGGCGGGC CCGAGTGGAC
  Y
  TCATGGTAGG AGTGCTTTGG CTGAGAGTGC CATCGTGGGC GAAGCCGACG ACTAAAGTGG
  CAGAATGTGG CTGCGAGGAA GGAAAGTTGG AAGCAGATGG ACACAGGCTG GGTGGAACCA
  TAGAGGAAGG GGTACAACCC CCTGGAAAGA GCGCGGGAAA GGGGCTGGGA AGGAAGGAGA
  GGCGGGCATA GGGTGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350468164	MGP_WTSI_1_92949729	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228609335					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468164	MGP_WTSI_1_92949729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90980874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	within coordinates
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	1474 bp distal
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	90 bp downstream
Tssr8032	transcription start site region 8032	22 bp upstream
Tssr8033	transcription start site region 8033	270 bp upstream
Tssr8034	transcription start site region 8034	370 bp upstream
Tssr8035	transcription start site region 8035	393 bp upstream
Tssr8036	transcription start site region 8036	399 bp upstream
Tssr8037	transcription start site region 8037	821 bp upstream
Tssr12924	transcription start site region 12924	324 bp upstream
Tssr12925	transcription start site region 12925	306 bp upstream
Tssr12926	transcription start site region 12926	280 bp upstream
Tssr12927	transcription start site region 12927	254 bp upstream
Tssr12928	transcription start site region 12928	104 bp upstream
Tssr12929	transcription start site region 12929	694 bp downstream