rs228612692 SNP Detail

Summary

• ID
  rs228612692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83879495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCGGGGG CGCGCGCGGC
  GGGCGGGGAC CCTCCGGCCA AGGACAGGCT GGGCTGGCTG TCCTCCGGCT GCACTTGGCG
  GGAAAGCCGG GGCTCGGCGG CGGGGCCGCG CGCCCGCCGC TCTCAGGACG GCCTCCCTTC
  TCCTCCCTGG GCCTCATTTA CATACTGGGG GTCGTCGAAT ATTTTACAGA GCGCCACCCC
  Y
  TCCTCGGCCT GGGTCGCACA CGCGCGCAGG CTACAACTAC AGCCCCGGGC TCCTCCAGCT
  CCGGGCGCGC AAACAGGCCC GAGGGAACAG CCAGCCCTCC TCGGGACAGA TTCCTGCACC
  GCCGCCCCCT CCCCCTCCGC GCCCGCACCC CTGACAGCCT CCTGCTGGTG TTGCAGGATA
  CCCACCTTCT CTCAAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389280624	MGP_WTSI_13_83870981	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228612692					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389280624	MGP_WTSI_13_83870981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83879495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5906	CpG island 5906	1396 bp distal
Cpgi5907	CpG island 5907	within coordinates
Cpgi5908	CpG island 5908	1350 bp proximal
Gm55122	predicted gene, 55122	within coordinates
Mir9-2hg	Mir9-2 host gene	within coordinates
Rr483282	regulatory region 483282	1886 bp distal
Rr483283	regulatory region 483283	1782 bp distal
Rr483284	regulatory region 483284	1130 bp distal
Rr483285	regulatory region 483285	266 bp distal
Rr483286	regulatory region 483286	within coordinates
Rr483287	regulatory region 483287	345 bp proximal
Rr483288	regulatory region 483288	1089 bp proximal
Rr483289	regulatory region 483289	1292 bp proximal
Tssr120527	transcription start site region 120527	1908 bp downstream
Tssr120528	transcription start site region 120528	1882 bp downstream
Tssr120529	transcription start site region 120529	2 bp upstream
Tssr120530	transcription start site region 120530	991 bp upstream
Tssr120531	transcription start site region 120531	1062 bp upstream
Tssr120532	transcription start site region 120532	1187 bp upstream
Tssr123339	transcription start site region 123339	1792 bp upstream
Tssr123340	transcription start site region 123340	1696 bp upstream
Tssr123341	transcription start site region 123341	1665 bp upstream