rs228614657 SNP Detail

Summary

• ID
  rs228614657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57553004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAAGCGC AAGGAAGGCA
  GCAGGCTCAG CGGCGGCGGC CAACCTCAGC TCGCCCGGGC TCCGATGGGA GGAAGCTCGC
  AGGCCTGGTG AGAGGAAGCG CGGCCCGGAT CCTCCGCCCG CTGCGGCGCG CCTGCGCGAG
  GGGGCCTGCC GGGCGAGCAG CGGGGCGTGG GTCGGCGCCC TCTGCTGGAC CTTGGAGGAA
  R
  TGCGGGGGGT GTGTCCGCGT CTACGCCCTG CCCCCACTTG CTGGCCTTCG CGAAGGCTCC
  CGAAGGTCCT TTCAGAGGGC CACCAGCATG CTAGAGCCAA CCTCTCAGCT TCCTCTAGGC
  GAAGCTTCCT TGCTAGAGTG GAGGTTAGGC CTAGACTCTT CTGGGACAGT AAGCATGCAT
  TTACACGGCC CCTGCTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377693417	MGP_WTSI_9_57493528	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228614657					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377693417	MGP_WTSI_9_57493528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57553004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	within coordinates
Csk	c-src tyrosine kinase	within coordinates
Rr679716	regulatory region 679716	195 bp distal
Rr679717	regulatory region 679717	within coordinates
Rr679718	regulatory region 679718	8 bp distal
Rr679719	regulatory region 679719	874 bp proximal
Rr679720	regulatory region 679720	1700 bp proximal
Tssr85319	transcription start site region 85319	442 bp downstream
Tssr85320	transcription start site region 85320	72 bp upstream
Tssr89801	transcription start site region 89801	1481 bp upstream
Tssr89802	transcription start site region 89802	585 bp upstream
Tssr89803	transcription start site region 89803	541 bp upstream
Tssr89804	transcription start site region 89804	514 bp upstream
Tssr89805	transcription start site region 89805	278 bp upstream
Tssr89806	transcription start site region 89806	180 bp upstream
Tssr89807	transcription start site region 89807	49 bp upstream
Tssr89808	transcription start site region 89808	989 bp downstream
Tssr89809	transcription start site region 89809	1025 bp downstream