rs228617057 SNP Detail

Summary

• ID
  rs228617057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:8972031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGATTCCGAG CCGACGTCCC GCGAGAGCGG CGCCGGGCGC CCAGAGCGCA
  R
  GCGCACAGGA GTTGGCAAGG GCCCGGGCCG AGGGCGGGCC AGAAGACGCG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886814	CHEV_12_8928837	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228617057					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8972031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	within coordinates
Gm60663	predicted gene, 60663	172 bp upstream
Laptm4a	lysosomal-associated protein transmembrane 4A	mRNA-UTR
Rr403227	regulatory region 403227	within coordinates
Rr462715	regulatory region 462715	423 bp distal
Rr462716	regulatory region 462716	183 bp distal
Rr462717	regulatory region 462717	264 bp distal
Rr462718	regulatory region 462718	within coordinates
Rr462719	regulatory region 462719	572 bp proximal
Rr462720	regulatory region 462720	1319 bp proximal
Tssr112751	transcription start site region 112751	360 bp downstream
Tssr112752	transcription start site region 112752	327 bp downstream
Tssr112753	transcription start site region 112753	321 bp downstream
Tssr112754	transcription start site region 112754	3 bp downstream
Tssr112755	transcription start site region 112755	11 bp upstream
Tssr112756	transcription start site region 112756	30 bp upstream
Tssr115725	transcription start site region 115725	158 bp upstream