rs228618420 SNP Detail

Summary

• ID
  rs228618420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103218298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGCTCC CTGCCTGCTC
  CTAGCCTAGA AGCCTTAACC AACAAAACCT AAAGCTCGGC AAACAGCTGA AGAGAAAGGG
  CGCCTCCGCA GGCAGGAGGA TTGCTTTCTA CAATTTTAAG CCACAGGAGA TCTAATGTGT
  TGGGGGTAAA TAGAACTCTC CCCTGTTGCC AGTACTAGAA TTTACTTCTA CCTGTAACTT
  W
  AAAAACAAAC AAAAAAATCT CTTTATTTAC AGTCTCTGAA CTGCGTCCTT GGGGTCTTCC
  AGCATACGGT CTACCATTCA ATTGTCTAAA ACTCTCTTTC TAATGAGGGT CAAATCTCTA
  ACAACCTTTT AAAGCACTCT CTCCACACAG CACTCTCAGT TCTGATCTCT GAAACCGCTA
  TGGAGTCAAA GGGTTTAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392294225	MGP_WTSI_14_103380079	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228618420					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294225	MGP_WTSI_14_103380079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103218298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6810	CpG island 6810	187 bp proximal
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Mir5130	microRNA 5130	1687 bp downstream
Rr404259	regulatory region 404259	952 bp downstream
Rr496945	regulatory region 496945	701 bp distal
Rr496946	regulatory region 496946	690 bp proximal
Rr496947	regulatory region 496947	867 bp proximal
Rr496948	regulatory region 496948	1061 bp proximal
Rr496949	regulatory region 496949	1765 bp proximal
Tssr126949	transcription start site region 126949	735 bp downstream
Tssr126950	transcription start site region 126950	434 bp upstream
Tssr126951	transcription start site region 126951	505 bp upstream
Tssr126952	transcription start site region 126952	573 bp upstream
Tssr130058	transcription start site region 130058	1096 bp upstream
Tssr130059	transcription start site region 130059	1065 bp upstream
Tssr130060	transcription start site region 130060	339 bp upstream
Tssr130061	transcription start site region 130061	596 bp downstream
Tssr130062	transcription start site region 130062	1768 bp downstream
Tssr130063	transcription start site region 130063	1833 bp downstream