rs228622768 SNP Detail

Summary

• ID
  rs228622768
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106477982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTGGGA TGGGACCTTC
  TCTATTTCCA TCTCAGAGCT ACATTAAATG GAGCCGGGCG TGGTGGCGCA CGCCTTTAAT
  CCCAGCACTT GGGAGGCAGA GGCAGAGGCA GGCAGATTTC TGAATTCAAG GCCAGCCTGG
  TCTACAAAGT GAGTTCCAGG GCAGCCAGGA CTACACAGAG AAACCCTGTC TCAAAAAAAC
  M
  AAAAAAAAAA AAAAAAATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
  ATTAAATGGG GGCTGGAGAT GGCTCAGAGG TTAAGAGCAC TGGATGCTCC GGGGGACTTT
  GGTTCAATTC CCAGCACCCA CATGTCAGCT TACAATTGTC TGTAATTCCA GTTCCAGGGA
  ATCTGACATA CCCGCACATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ
ss362740413	MGP_WTSI_4_106293390	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	A	A	A	C	C	C	C	C	C	A	C	C	C	C	C	A	C	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ
rs228622768					SNP	C	C	C	A	A	A	A	C	C	C	C	C	C	A	C	C	C	C	C	A	C	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362740413	MGP_WTSI_4_106293390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106477982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	1598 bp proximal
Gm69799	predicted gene, 69799	1301 bp downstream
Rr596779	regulatory region 596779	1550 bp distal
Rr596780	regulatory region 596780	1157 bp proximal
Tssr38185	transcription start site region 38185	1639 bp upstream
Tssr38186	transcription start site region 38186	1701 bp upstream
Tssr38187	transcription start site region 38187	1743 bp upstream
Ttc22	tetratricopeptide repeat domain 22	1664 bp upstream