rs228632286 SNP Detail

Summary

• ID
  rs228632286
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:99537770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCGAGGTG ACATTTCTTT GGAAAATTAA AAGCAAAATA
  TACGACTCCT ATTCACTGAC TGAGGTGAAT GGTTCTATGA ACCATTTCAT TTACCTGGGG
  T
  TTGATCTTTT TCTGACTTCC TTTTTTTTCA ATGTCAAAAA AAAAATCAAG AGAAAGCGTT
  CGTTATATTA GAGAAGAGAG CTGGGGGAAA GATAGGCGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324792946	CHEV_14_99699553	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228632286					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:99537770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6800	CpG island 6800	484 bp distal
Klf5	Kruppel-like transcription factor 5	within coordinates
Rr291012	regulatory region 291012	1231 bp proximal
Rr297571	regulatory region 297571	within coordinates
Tssr126881	transcription start site region 126881	1619 bp downstream
Tssr126882	transcription start site region 126882	1345 bp downstream
Tssr126883	transcription start site region 126883	1300 bp upstream
Tssr126884	transcription start site region 126884	1329 bp upstream
Tssr126885	transcription start site region 126885	1354 bp upstream
Tssr126886	transcription start site region 126886	1469 bp upstream
Tssr126887	transcription start site region 126887	1565 bp upstream
Tssr126888	transcription start site region 126888	1647 bp upstream