rs228632826 SNP Detail

Summary

• ID
  rs228632826
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133990109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgaagcca ggctgtccta cgtaggaaaa
  cccaggagag agagaaagag agagagagag agagaCTCAT TTTCTACTTT TGCAAAAGTC
  CCTAGGAACT AGGTCCAGCA CCCCTCAGAG TTGGGAGGGA ATGAAGAAGG ACTAGAGGAA
  W
  CAGGAATGTT TCATATTAGT GAATTTTACC ACAATTAAAA AAGAAGTCCA AAGACAATCT
  TCTGGCCCAC GTGTCCAGTC CTGCCCAGTT AACTGAACAA GTTTAGAGCA ACTTCAAGCA
  CCAGAGACGT CCCCCTAAAC TTCAGAGCTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319981825	CHEV_1_135958948	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228632826					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133990109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	932 bp distal
Cpgi759	CpG island 759	756 bp proximal
Gm19497	predicted gene, 19497	1424 bp upstream
Gm57140	predicted gene, 57140	635 bp downstream
Rr1740	regulatory region 1740	within coordinates
Tssr8846	transcription start site region 8846	1281 bp downstream
Tssr8847	transcription start site region 8847	1264 bp downstream
Tssr8848	transcription start site region 8848	1221 bp downstream
Tssr8849	transcription start site region 8849	1082 bp upstream
Tssr8850	transcription start site region 8850	1149 bp upstream
Tssr13763	transcription start site region 13763	1556 bp upstream
Tssr13764	transcription start site region 13764	1498 bp upstream
Tssr13765	transcription start site region 13765	1412 bp upstream
Tssr13766	transcription start site region 13766	911 bp downstream
Tssr13767	transcription start site region 13767	944 bp downstream
Tssr13768	transcription start site region 13768	984 bp downstream
Tssr13769	transcription start site region 13769	995 bp downstream