rs228635265 SNP Detail

Summary

• ID
  rs228635265
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAACTAAC ATCTATTTTG
  TACCTCTTAT CCTCATCCTT GAATCATGTT GGTGTTAATG AAACACTTTA CGCCTCTGCC
  AGCCTATCTT ATGTGCAAAG GTGTGTGTGG TGGGGGCCTG GGGGGCAAGC ATCCAAACTG
  ACAGGCCGGA AAGTGTGGGA GGCGATCTGA TAAATAATGA AGCTGCCTGT TTCCTGGGAA
  G
  GATTAAGAGT GGCAGAGAGC CATGATCTCT TTGGTGATAG GGAGTCCGGC TTGGGATGCA
  GCTGGGTTCA GTGGGTCATT TTCTAAATAA AACAAAAAAT TAGGATCGTG GCTTCCTAAG
  AACAGGGATA GTAAAAAGAG CTTACAGCTG ACTCTTTAGG GAGCTGGAGA AATGACCCAG
  CACTCGAGAG CACTTACTGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509813	CHEV_2_132640305	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228635265					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12310	CpG island 12310			1057 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor			1572 bp upstream
Rr397334	regulatory region 397334			1369 bp upstream
Rr565537	regulatory region 565537			1475 bp proximal
Rr565538	regulatory region 565538			1583 bp proximal
Trmt6	tRNA methyltransferase 6			Intron
				Noncoding-Transcript-Variant
Tssr20335	transcription start site region 20335			1568 bp upstream
Tssr20336	transcription start site region 20336			1579 bp upstream
Tssr20337	transcription start site region 20337			1600 bp upstream
Tssr26490	transcription start site region 26490			1409 bp downstream