rs228638388 SNP Detail

Summary

• ID
  rs228638388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61926103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTGCT GTTGGATGTC
  TTGCATCGTT TGTCACCAGT GTGAGGGTCC TTGGTAGAAG TTGCCAGAAG TTTATGGAAA
  TAGTAATGAA ATCTTGACTA CGTATGCCCA GGCTGCCCCC TGCAGGGAGT TTCTTATGTC
  AAAGTATTGG CTAGGGAACC CATTTGGCCA GGTTCCTCCT TCCCTGCAAG AACATCTGGG
  Y
  TCCTGAATGG GAAGACTGCC AGGGTAACAG CACTTGCTGC CGCAGAGGCA TAGACATTTA
  AAAAATCAAA TGACATCCTG GCAGAGATAG TGCATGCCTT TAATTCCTGC ACTCAGGAGG
  CAGAGCCAGG AGGATTTCTG CATCTGAGGT CTACAGAGAG AGAGAGAGTT CCAGGTCAGC
  CAGAGCTACA CAGAGAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645768	CHEV_18_61952686	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228638388					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61926103 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	1821 bp downstream
Rr346544	regulatory region 346544	within coordinates
Rr346545	regulatory region 346545	498 bp proximal
Rr351728	regulatory region 351728	within coordinates
Rr354902	regulatory region 354902	703 bp distal
Rr356351	regulatory region 356351	662 bp proximal