rs228643100 SNP Detail

Summary

• ID
  rs228643100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAGCATT CCCAGGGCTG TGCAGGAAAG
  GGATCTGAAG GAGGACCAGA ACCAGGGAAA TAATACCCCA TGGCCACGAG GGCATAAAAG
  AATTAGCCAG TCACAAAATG TTGATCTTCA AGTTGGATTT ATGTCCAAGA TTTGTGCAAA
  Y
  GGCTGCCTAG CAACAGACAG CTACCTTAAT ATAGACCTCT GGCACCATAA ACATCTAACT
  GTGGAGGCCG GAGTCATCTC AGTCTGGGGC CCTTCAGCAG ACATGGCTGG TGTGGCCTTC
  ATCCCAGATC TTGGTGGCTC TCAGGAGGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674151	CHEV_11_54724329	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228643100					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801653 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	440 bp downstream
Tnip1	TNFAIP3 interacting protein 1	within coordinates
Tssr3502	transcription start site region 3502	1183 bp upstream
Tssr3503	transcription start site region 3503	711 bp downstream
Tssr101565	transcription start site region 101565	1760 bp downstream
Tssr101566	transcription start site region 101566	1714 bp downstream
Tssr101567	transcription start site region 101567	1351 bp downstream
Tssr101568	transcription start site region 101568	1277 bp downstream
Tssr101569	transcription start site region 101569	1194 bp downstream
Tssr101570	transcription start site region 101570	1143 bp downstream
Tssr101571	transcription start site region 101571	1067 bp downstream
Tssr101572	transcription start site region 101572	1023 bp downstream
Tssr101573	transcription start site region 101573	996 bp downstream
Tssr101574	transcription start site region 101574	971 bp downstream
Tssr101575	transcription start site region 101575	924 bp downstream
Tssr101576	transcription start site region 101576	903 bp downstream
Tssr101577	transcription start site region 101577	881 bp downstream
Tssr101578	transcription start site region 101578	796 bp downstream
Tssr108010	transcription start site region 108010	1756 bp upstream
Tssr108011	transcription start site region 108011	1140 bp upstream
Tssr108012	transcription start site region 108012	1059 bp upstream
Tssr108013	transcription start site region 108013	1039 bp upstream
Tssr108014	transcription start site region 108014	1024 bp upstream
Tssr108015	transcription start site region 108015	943 bp upstream
Tssr108016	transcription start site region 108016	881 bp upstream
Tssr108017	transcription start site region 108017	840 bp upstream
Tssr108018	transcription start site region 108018	819 bp upstream
Tssr108019	transcription start site region 108019	750 bp upstream
Tssr108020	transcription start site region 108020	731 bp upstream
Tssr108021	transcription start site region 108021	714 bp upstream
Tssr108022	transcription start site region 108022	671 bp upstream
Tssr108023	transcription start site region 108023	447 bp upstream