rs228648866 SNP Detail

Summary

• ID
  rs228648866
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181506959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTCATTC TTACACAGGC
  ACATATCACA CTTATTCATT CTCCGCCTTA CCCCCTACCC CCGTGTATGT GTGCATGTAT
  GCGTCTCTGT TTCCCTCTTC CTTTCTCTCT CCCTCTCCTC TTTTAAAATA ATGGCTACCT
  TATTTAGATT CCTGCCCTTC TGGCTGTTTG TGCATGTCTA TAATTTTAGC ACTTGGAGAG
  K
  CTGCGGCAGG AGAATAGGTT CAAGGCTCAC CTGGGCTGCA TAGCACATAG ACACGCACAC
  ACACGCACGC ACAGGCACAG GAAACAAACC AAACCCCAGC ACTTTCAGTT TATCCACATT
  CCTTTTATAT TTTTCACAGA ATGCATTGCC TTCTAATATT TTATATCCTT GTTGCTATTT
  TGTGTGTGTG GTGCTTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356784623	MGP_WTSI_2_181599871	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	T	T	T	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228648866					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	T	T	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356784623	MGP_WTSI_2_181599871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181506959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12941	CpG island 12941	282 bp distal
Gm57457	predicted gene, 57457	940 bp upstream
Polr3k	polymerase (RNA) III (DNA directed) polypeptide K	within coordinates
Rr41733	regulatory region 41733	1642 bp proximal
Rr56343	regulatory region 56343	within coordinates
Rr60538	regulatory region 60538	1242 bp proximal
Rr397596	regulatory region 397596	699 bp downstream
Tssr22352	transcription start site region 22352	728 bp downstream
Tssr22353	transcription start site region 22353	702 bp downstream
Tssr28245	transcription start site region 28245	933 bp upstream