rs228649438 SNP Detail

Summary

• ID
  rs228649438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53748281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCGAGTG CTGGGAACCG
  GGAAAGTTGC GGGCGTCTGA CCGCCGGCGG CAGGCGGCGG GCCGGGGCCG CGCGGCGCGC
  CGGGGCCTCG GGAGGCGGCG CGGGGCGGCG ACGCGATGGC GCGGGCCGGT GCGGGGCTCG
  CCCGTGCGCC GCGGTGGAGC GGGCTCCGGG CGCGTGAGGG CGGGCGGTGG CGAGGCCGGC
  R
  GCTGCGGGCG GAGTGCGGCC GGCGCGCGGG GCCGTAGGCA CCGTGCCCGG CGCGCGCCCC
  CCTCGGCGGG CCTGGCGGGG ATCCCGGCGC AGCTTTGTTC CCCGTGCGTG GCCCGCGTCG
  CCTGTCCTCC CAGCCGCTGC CCTGGGCGCC GGAGCGCTTT GTCTGTGTGC GCTGCCCCCC
  GCGATTCTGC CCCCAGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963860	MGP_WTSI_5_53982178	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228649438					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963860	MGP_WTSI_5_53982178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53748281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	1853 bp downstream
Rr611645	regulatory region 611645	1569 bp distal
Rr611646	regulatory region 611646	458 bp distal
Rr611647	regulatory region 611647	within coordinates
Rr611648	regulatory region 611648	53 bp proximal
Rr611649	regulatory region 611649	551 bp proximal
Rr611650	regulatory region 611650	969 bp proximal
Tssr46225	transcription start site region 46225	1974 bp downstream
Tssr46226	transcription start site region 46226	1495 bp downstream
Tssr46227	transcription start site region 46227	588 bp downstream
Tssr46228	transcription start site region 46228	562 bp downstream
Tssr46229	transcription start site region 46229	506 bp downstream
Tssr46230	transcription start site region 46230	410 bp downstream
Tssr46231	transcription start site region 46231	271 bp downstream
Tssr46232	transcription start site region 46232	236 bp downstream
Tssr46233	transcription start site region 46233	217 bp downstream
Tssr46234	transcription start site region 46234	120 bp upstream
Tssr46235	transcription start site region 46235	294 bp upstream
Tssr46236	transcription start site region 46236	309 bp upstream
Tssr46237	transcription start site region 46237	461 bp upstream
Tssr46238	transcription start site region 46238	527 bp upstream
Tssr46239	transcription start site region 46239	590 bp upstream
Tssr46240	transcription start site region 46240	657 bp upstream
Tssr46241	transcription start site region 46241	978 bp upstream
Tssr51023	transcription start site region 51023	1674 bp upstream
Tssr51024	transcription start site region 51024	747 bp upstream
Tssr51025	transcription start site region 51025	350 bp upstream