rs228652571 SNP Detail

Summary

• ID
  rs228652571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123558487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTGCACG AACTCCTTCT
  CCTGGCTGCG GTTGGCCGGC TGCTGACCCG GCACGTAGCC GGCCATGGCT GCCCGCGCCG
  CGCTCTGCCC GGGCCCCGGG GGGCGCCGGC TCCAGGCCCG CGCGCTGAAG CGGCGGCGGC
  GGCCCCAGTC TCGGCCTTTG TGCGGTTCGG CGGCGGTGGC GCCTTGGCTC TCTCGCTCTC
  R
  GATCTGCGTC CGTCTCGCCC GGCCCGGCAG TCGCGCTCGG CTCCCTCAGT CCGCTCGCAC
  CCGGCCCGCT CGCGCTCCGC CGGTCCCGGC TCGCGTTTCC GCCTCCCCAC CCCTCGGCTC
  CGCTCCTCCC TCAGCCCGCC CCGGCGCGAC GGCGGCGGCG GCGCCTCCTG TCAGGAGCGC
  CGGGCCGGGC CGGTTCCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363089320	MGP_WTSI_4_123341937	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228652571					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363089320	MGP_WTSI_4_123341937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123558487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14755	CpG island 14755	within coordinates
Gm12925	predicted gene 12925	1187 bp upstream
Macf1	microtubule-actin crosslinking factor 1	within coordinates
Rr84970	regulatory region 84970	1914 bp proximal
Rr99952	regulatory region 99952	within coordinates
Rr377112	regulatory region 377112	587 bp downstream
Rr377113	regulatory region 377113	1086 bp upstream
Tssr38865	transcription start site region 38865	114 bp upstream
Tssr43288	transcription start site region 43288	31 bp downstream
Tssr43289	transcription start site region 43289	774 bp downstream
Tssr43290	transcription start site region 43290	807 bp downstream