rs228653779 SNP Detail

Summary

• ID
  rs228653779
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAAAG AAAAGAAAAG
  AAAAGAAAAG AAAAGAAAAG AAAAGAAAAG CAAGAAAGAA GAGGGCCAGA GAAATGCTTC
  AGTGGGTGAA GGCATTGCTG CCAAAACTTA CACATTGAGT TTGAGTACTG GAATTAACAG
  GATAGGAGAG AATCAATTCT CAAAAGTTGA CCTCTGACCT CCACTCTCCC ATTTACATAC
  A
  GACACACACA CAGCTCCTAA AGTATAGTTA CACACACACA CACACACACA CACACAGAAA
  AAGCATGAAG GCAGGCTAGT CAATCTTCCC CACTCCTCTA TTTTTCGGTT TCACTATGTA
  GTCCAGGCTA GCTTGGACCT CAGGACTCTG CTTTAGCCTC CTGTGTGCTG GATGACAGAG
  ATGCATCACC ACACCCAGCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388832	CHEV_4_141218945	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228653779					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	154 bp proximal
Gm54266	predicted gene, 54266	1065 bp upstream
Gm70264	predicted gene, 70264	1992 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603850	regulatory region 603850	575 bp proximal
Rr603851	regulatory region 603851	1078 bp proximal
Rr603852	regulatory region 603852	1178 bp proximal
Rr603853	regulatory region 603853	1859 bp proximal
Tssr40091	transcription start site region 40091	1157 bp upstream
Tssr40092	transcription start site region 40092	1211 bp upstream
Tssr44355	transcription start site region 44355	969 bp downstream
Tssr44356	transcription start site region 44356	1033 bp downstream