rs228657450 SNP Detail

Summary

• ID
  rs228657450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91368458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG CTTGATCAGA GACGGCATAG
  W
  GGCTCTCGAC TTTAATCCCA GCAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324117496	CHEV_12_92640124	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228657450					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91368458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4953	CpG island 4953	466 bp distal
Rr258556	regulatory region 258556	1258 bp distal
Rr265753	regulatory region 265753	457 bp distal
Tshr	thyroid stimulating hormone receptor	within coordinates
Tssr114585	transcription start site region 114585	1232 bp downstream
Tssr114586	transcription start site region 114586	1207 bp downstream
Tssr114587	transcription start site region 114587	662 bp downstream
Tssr114588	transcription start site region 114588	646 bp downstream