rs228665897 SNP Detail

Summary

• ID
  rs228665897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGCTG CCTTCTGAGA
  CATGTCTCAT CTATTTTCTT TCTGTATGTG TATTTGTATG TGTTAGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGCGCG CGCGCGCCTT TGGAGGCCAG AGGACAACAT
  TGGAAGCTGT TCATCTTTTT TTAAAAAAAT TTTAACGATG TGTGTGTGTG TGTATGTCTG
  Y
  GCCACATGGT GCTTATAGAG GGCAGAAGAT AGATAAATTT TCGGGACTGG GCCTCTCCTG
  CCACAGGCTG TGCTCCAAGG CAGGTTCTGC CATCTCCAAT AAGCCAAGTA AAAGAACCAA
  ATTTCTAGAG GAAACAGAAA AAGGTTTACA CACAGTGTGG TCACATTTAG AAGGGCACAA
  AGCGATCTGG TGATCCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371173037	MGP_WTSI_7_52495222	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228665897					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371173037	MGP_WTSI_7_52495222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889276 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	737 bp upstream
Cpgi19038	CpG island 19038	718 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1233 bp upstream
Tssr66503	transcription start site region 66503	1222 bp upstream
Tssr66504	transcription start site region 66504	1257 bp upstream
Tssr72351	transcription start site region 72351	1096 bp upstream
Tssr72352	transcription start site region 72352	988 bp upstream
Tssr72353	transcription start site region 72353	786 bp upstream
Tssr72354	transcription start site region 72354	749 bp upstream
Tssr72355	transcription start site region 72355	719 bp upstream
Tssr72356	transcription start site region 72356	565 bp upstream
Tssr72357	transcription start site region 72357	557 bp upstream
Tssr72358	transcription start site region 72358	532 bp upstream
Tssr72359	transcription start site region 72359	502 bp upstream
Tssr72360	transcription start site region 72360	465 bp upstream
Tssr72361	transcription start site region 72361	442 bp upstream