rs228669821 SNP Detail

Summary

• ID
  rs228669821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115192142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTTATCG CCCCACGACA GGCCGTATCC CTAGCTCTAG
  AGCCCTGCAG CGGCCCCTCA GCCCAGCCCC GCACAGCTCA CCCCTTTGTT TTTGTTTTTA
  Y
  GGCCAGTTTC ACCCTAGAAT GTTGTTGATA AAGCAGTAGA GACTCCTTGT CTCAATCCTT
  GCACACATAG TTTAATGTTC CCACAAGCAT CTGTGCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321654190	CHEV_5_115504092	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228669821					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115192142 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13827	predicted gene 13827			243 bp upstream
Rr618105	regulatory region 618105			1094 bp distal
Rr618106	regulatory region 618106			within coordinates
Rr618107	regulatory region 618107			1273 bp proximal
Sppl3	signal peptide peptidase 3			Intron
				Noncoding-Transcript-Variant
Tssr48203	transcription start site region 48203			615 bp downstream