rs228673742 SNP Detail

Summary

• ID
  rs228673742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67055106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAAAAA AAAAAAAACA
  AAACAAAAAA AACAAACAAA AAAAAAACAG AAATGTAGAC AAAATTATTC AGTAATAAAG
  CCAGTGTTCT GAATCCAATA CAAAATTAGT TGCTGATACA TAGCTCAAAT ATAAACAGTG
  TACTTTATTA AAGCTCAATA GTGGTCTTAC CATGCTGTCT TTCAGACTTA AGCTGAGACC
  S
  AGGACAGCAT AGAACTGTCT CATTATGAAT CCAAAATGTT ATGTAATGAT TTTAGTCAGA
  AGTTCTAGTT CCGTTGCCTT CTTCCCTTTT CTTCTGTTTC TGATGCAGCT CTCGGACTAT
  ATGCAGTGGC CACCATGAAG TCTGAAGGAT AGGAGTAAAT ATATACATTT GTACACTGGC
  ACATTGTAAA GGGGATTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324388722	CHEV_13_67007978	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228673742					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67055106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5796	CpG island 5796	1669 bp distal
Mterf3	mitochondrial transcription termination factor 3	within coordinates
Ramacl	RNA guanine-7 methyltransferase activating subunit like	within coordinates
Rr273407	regulatory region 273407	495 bp proximal
Rr281575	regulatory region 281575	905 bp distal
Rr369737	regulatory region 369737	1610 bp downstream
Tssr123084	transcription start site region 123084	1672 bp upstream
Uqcrb	ubiquinol-cytochrome c reductase binding protein	1664 bp upstream