rs228673742 SNP Detail

Summary

• ID
  rs228673742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:67055106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAAAAA AAAAAAAACA
  AAACAAAAAA AACAAACAAA AAAAAAACAG AAATGTAGAC AAAATTATTC AGTAATAAAG
  CCAGTGTTCT GAATCCAATA CAAAATTAGT TGCTGATACA TAGCTCAAAT ATAAACAGTG
  TACTTTATTA AAGCTCAATA GTGGTCTTAC CATGCTGTCT TTCAGACTTA AGCTGAGACC
  S
  AGGACAGCAT AGAACTGTCT CATTATGAAT CCAAAATGTT ATGTAATGAT TTTAGTCAGA
  AGTTCTAGTT CCGTTGCCTT CTTCCCTTTT CTTCTGTTTC TGATGCAGCT CTCGGACTAT
  ATGCAGTGGC CACCATGAAG TCTGAAGGAT AGGAGTAAAT ATATACATTT GTACACTGGC
  ACATTGTAAA GGGGATTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324388722	CHEV_13_67007978	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228673742					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67055106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mterf3	mitochondrial transcription termination factor 3			mRNA-UTR
				Noncoding-Transcript-Variant
Ramacl	RNA guanine-7 methyltransferase activating subunit like			Intron
Rr369737	regulatory region 369737			1610 bp downstream
Rr481964	regulatory region 481964			1675 bp distal
Rr481965	regulatory region 481965			1617 bp distal
Rr481966	regulatory region 481966			1053 bp distal
Rr481967	regulatory region 481967			1594 bp distal
Rr481968	regulatory region 481968			1342 bp distal
Tssr123084	transcription start site region 123084			1672 bp upstream
Uqcrb	ubiquinol-cytochrome c reductase binding protein			1664 bp upstream