rs228673834 SNP Detail

Summary

• ID
  rs228673834
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106431646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGGTGG GGACATCTCA
  TGGAGTCAGG GGAGCGGGGA GGAGGTATGG GATGTGGTAC AGTTGAAGGG TGGAATAAAC
  TCTGGAGTTT ACATCACTGG AAAGAGAGGC CCATTGGACT TGGAAACTTT ATATGCCCCA
  GTACAGGGGA AGGCCAGGGC CAAAAAGGGG GAGTGGGTGG GTAGGGGAGT GGGGGGGGGG
  T
  GGGTAAAAAA ATCATCTATA CACAATGGAG TACTACTCAG CTATTAAAAA GAATGAATTT
  ATGAAATTCC TAGCCAAATG GATGGACCTG GAGGGCATCA TCCTGAGTGA GGTAACACAT
  TCACAAAGGT ACTCACACAA TATGTACTCA CTGATAAGTG GATATTAGCC CAAAACCTAG
  GATACCCAAG ATATAAGATA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss359129747	MGP_WTSI_3_106327248	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs228673834					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359129747	MGP_WTSI_3_106327248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106431646 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	within coordinates
Tssr34972	transcription start site region 34972	1124 bp downstream