rs228675575 SNP Detail

Summary

• ID
  rs228675575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGAGAGGA GTGAACATCA
  GGAAAAAAAT AAAATTGAAT TCTGATACAA TTAACTATTT TCCCCATTTA AAAGTATCTT
  AGATTAAACA CTACAAGGAG AAATGCCATC TAGCTGTAAC TTGATAATCA ACTCATGTCT
  CAAAGAGAAA CTACTCCAGA AATAATTATT GACCAGACCA GATATGTAAG AAGGACTGAA
  M
  CTTCAGTAAG CAGTGCCTGC CTGGTCACCC TGTCCTGAAG GACACAGCAT TTGTAGGAAT
  TTTATGAACT GTAACACACG TCTACCTTTT CAAGGCTGTA CTCTGTACCC ATCACCCAGG
  AAGGGCGGTG GCTCTACCAG AATTTCCACA GCAGAATTCA TAGGAAGCAT TATCTCAGAA
  CTAAAATGAT TAATTCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608834	MGP_WTSI_1_140070840	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228675575					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608834	MGP_WTSI_1_140070840	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102001 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	964 bp upstream
Rr396336	regulatory region 396336	1925 bp upstream
Rr419676	regulatory region 419676	1129 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	994 bp proximal
Tssr233	transcription start site region 233	1355 bp downstream
Tssr9150	transcription start site region 9150	1963 bp downstream
Tssr9151	transcription start site region 9151	1948 bp downstream
Tssr9152	transcription start site region 9152	1532 bp downstream
Tssr9153	transcription start site region 9153	184 bp upstream
Tssr9154	transcription start site region 9154	1365 bp upstream
Tssr9155	transcription start site region 9155	1428 bp upstream
Tssr14018	transcription start site region 14018	19 bp downstream
Tssr14019	transcription start site region 14019	48 bp downstream
Tssr14020	transcription start site region 14020	80 bp downstream
Tssr14021	transcription start site region 14021	918 bp downstream
Tssr14022	transcription start site region 14022	975 bp downstream
Tssr14023	transcription start site region 14023	1020 bp downstream
Tssr14024	transcription start site region 14024	1363 bp downstream
Tssr14025	transcription start site region 14025	1390 bp downstream
Tssr14026	transcription start site region 14026	1408 bp downstream
Tssr14027	transcription start site region 14027	1429 bp downstream
Tssr14028	transcription start site region 14028	1455 bp downstream
Tssr14029	transcription start site region 14029	1479 bp downstream
Tssr14030	transcription start site region 14030	1633 bp downstream
Tssr14031	transcription start site region 14031	1650 bp downstream