rs228678669 SNP Detail

Summary

• ID
  rs228678669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4564677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAGCGA GTGAGGATGT
  CTGAGGCTCT TACACATTAA CGGCAGGAAG TGGAGTACCG AAGGGAGGCT GGGAATTTGA
  ACGCCTTCCC ATTTCAGCAC TCGAGGGGAG GAAGCGCTGC TCAGCCCTCC GCGTGCACAG
  ATGGCTACCG CTCCCTCCTG AGCACTGTGT TCCCGGCTGC GATCCTCCTC CTCTCCCTCC
  Y
  CTCAGCTCCC CGCCCCCACC TCCTCTCCCT CTCCTTGGAG GGAAAAGTCT GCAGAGCTGA
  GAACTGTCTT GGAGAATTCA ACAAAGGCTC GAGCCAAAGG GGAGCAAACT TTAAAGAGAA
  CTTGTTTTGT GTCTGTTAAG GAACCTGCTG AAAAAATCCA CACCTATTGG TGTGTGTGTT
  TCGAGCACTA GTAGTAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352933308	MGP_WTSI_2_4480912	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228678669					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352933308	MGP_WTSI_2_4480912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4564677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	within coordinates
Frmd4a	FERM domain containing 4A	within coordinates
Rr1275	regulatory region 1275	1991 bp downstream
Rr367095	regulatory region 367095	51 bp downstream
Rr551084	regulatory region 551084	1707 bp distal
Rr551085	regulatory region 551085	100 bp distal
Tssr15962	transcription start site region 15962	237 bp downstream
Tssr15963	transcription start site region 15963	210 bp downstream
Tssr15964	transcription start site region 15964	160 bp downstream
Tssr15965	transcription start site region 15965	111 bp downstream
Tssr15966	transcription start site region 15966	56 bp downstream
Tssr15967	transcription start site region 15967	12 bp upstream
Tssr15968	transcription start site region 15968	47 bp upstream
Tssr15969	transcription start site region 15969	65 bp upstream
Tssr15970	transcription start site region 15970	184 bp upstream
Tssr15971	transcription start site region 15971	252 bp upstream
Tssr22384	transcription start site region 22384	172 bp upstream