rs228678843 SNP Detail

Summary

• ID
  rs228678843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158953087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATACCT CACTACACCC
  CCATAGAACA TAACCCCTAC CTCTTTATCT TTTCATAAAC ACATCACTTG CTACCAAAAA
  TAGGGCCCTG AGTTTGGTCT CTGGGACCTG CATAGAGTGA GGAGAGAACT GACTCTTACA
  AGTTGTTCTC TGACCTCTAC ATGCTTGCCA TTGGCACACA TGCTCTCCAT GAATAAATGA
  R
  TATAAAATAT ATAAACTATA CAAATGTGCC AGACTTAGGA GGTAGAGGCA GCAGGAACTG
  CCTGTTAACG GCCTTTTTGT CTCCATAGGG AGTTTTGAAG CCAGTTGGGC TAGAGATTCT
  GCTTCAAAAC AAGCAAACAG GCTGGAGAGG TTAAGGACAA TTGCTGCTCT TCTAAAAGAC
  ACGAGTTGAA CTCCCATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325989497	CHEV_X_156608023	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228678843					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158953087 () rs orientation: forward

Symbol	Name	Function Class
Rr3474	regulatory region 3474	within coordinates
Rr5628	regulatory region 5628	within coordinates