rs228688226 SNP Detail

Summary

• ID
  rs228688226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112791415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTCTGT ATAAATTACG
  TTCCACATCT CACACCTATT TCCAGATGGC CAGAATCGCT TTCCAAGTCT AGGTAAATGT
  CTGACATTCC TTCAGTCCAA AGCTAAGTCA AGGCACAATG GTGCCCTCCA ATTTTCCCCA
  CCCAAGCACT GGCTGAACAA CAAGAGCCAG GCATTCTGGG GGCTCAGATA GTGTTGAGGC
  Y
  GGTGGACAGT AAAGTGGAAG TGAGTGCTAA CTACCCTACA ACAACCTGAG GTAAAGAGAC
  GGCCCAGGAC TCCACAACCA TCATATCTTG GAGCCGTCCT ACCTCAGTGA CCATGTGGGA
  GCAGCTTCCT GGGCTCTGAC CATCCACTAG AGTCTTGGTT TTACCTGTGC AGATCTATGA
  CAACCCAGGC TTGGATTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387393538	MGP_WTSI_12_114066006	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228688226					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387393538	MGP_WTSI_12_114066006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112791415 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	878 bp proximal
Gm52009	predicted gene, 52009	275 bp upstream
Gm56552	predicted gene, 56552	1790 bp upstream
Rr387795	regulatory region 387795	1040 bp upstream
Tssr3960	transcription start site region 3960	1661 bp downstream
Tssr115439	transcription start site region 115439	1353 bp upstream
Tssr115440	transcription start site region 115440	1865 bp upstream
Tssr117911	transcription start site region 117911	1230 bp downstream
Tssr117912	transcription start site region 117912	1556 bp downstream
Tssr117913	transcription start site region 117913	1691 bp downstream