rs228701019 SNP Detail

Summary

• ID
  rs228701019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38219961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT AAACTGTAAA AAACCAAGTA
  R
  GCTAAGGAAG CTAGGCAGGG CTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss643340648	FVB_NJ_13_38127854	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	G	G	G	A	A	A	G	A	G	G	G	G	A	A	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	A	G	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228701019					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	G	G	G	A	A	A	G	A	G	G	G	G	A	A	G	G	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	A	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643340648	FVB_NJ_13_38127854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38219961 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	619 bp proximal
Riok1	RIO kinase 1	1010 bp upstream
Rr281252	regulatory region 281252	39 bp proximal
Rr369679	regulatory region 369679	1361 bp upstream
Tssr119342	transcription start site region 119342	1250 bp upstream
Tssr122123	transcription start site region 122123	905 bp downstream
Tssr122124	transcription start site region 122124	940 bp downstream
Tssr122125	transcription start site region 122125	1098 bp downstream
Tssr122126	transcription start site region 122126	1180 bp downstream
Tssr122127	transcription start site region 122127	1934 bp downstream
Tssr122128	transcription start site region 122128	1956 bp downstream
Tssr122129	transcription start site region 122129	1986 bp downstream