rs228701088 SNP Detail

Summary

• ID
  rs228701088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121575658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAAAAC TAGGCGACTA
  GCTATGAACT CCTGTCTGGC TTCCATCTGA CAACCTTGGT GGTGTAAGGG CTGATAAGGC
  TTCTGGCTCT GATGGACACG CAAGAGCTGA CGTCAAGCCC GTGTGACGTC ATCCGCGCTA
  AGGCGCTGGC CTCCAGGGGC CTCCGGAGGG CAGGAGACGT CCCGGGGCTG GAGGTGGCTC
  Y
  GCTGCAGGTC TCTGGCTCTG GAAGCTCAGG TTCCTAGGCT TGGTAGCCAC CTCCACCTTT
  CACCTCCGCC ACGCCCTCTG CGAGCCCCGG GAGCATCCCG CCGCCAGCCG GCTCGCCCGC
  CCCGCCGCGG GCACGCGCAC GCACGCAGCT GCGCACGCGC GTCCCCCTCA GAACCCGGAA
  GTGCGAGCGG AGCCACGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323514841	CHEV_10_121176809	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228701088					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121575658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2295	CpG island 2295	within coordinates
Kics2	KICSTOR subunit 2	177 bp upstream
Rr440270	regulatory region 440270	within coordinates
Tssr96047	transcription start site region 96047	162 bp upstream
Tssr99640	transcription start site region 99640	558 bp downstream