rs228703628 SNP Detail

Summary

• ID
  rs228703628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154974093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGTCCC TGTCTGCACC
  CCCAAAGTCT CAAGCCCCGG GGAAGGGGTG GTGCATTCCA GAATCACAGA ACAGTCTCAA
  CACAAGACAA ACTTACACAC GGACACACAC AGATACAAAA GTTAACGATC GATCGTCCTC
  TTCCAATAAG CCTCCAACTC TAGGTCTCAG GATGAGACTC GAGAGCCACG GCCCAGCCGG
  R
  CTGCCCCTTC TGGGGCGATG TGCTGCCCGG CAGCAACCAG TCTCCCCTAC GCGCCCAGCG
  CCTACGGTCT CGGCTCGTCC TCGCGGCCGG GAGAGGCCCC GGCCGCACTT CGGGGACTCC
  CGCTGCTCAA GCTCCAGCCA CTCGGGTCCC GGGGGCTCAG AAGGCCACGA TGGCTGTGCT
  CCAGGGGCTC ATGTCTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352010276	MGP_WTSI_1_156945477	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228703628					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352010276	MGP_WTSI_1_156945477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154974093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	within coordinates
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	1394 bp upstream
Ier5	immediate early response 5	within coordinates
Rr28750	regulatory region 28750	within coordinates
Rr396412	regulatory region 396412	1226 bp upstream
Tssr249	transcription start site region 249	1599 bp upstream
Tssr9525	transcription start site region 9525	116 bp downstream
Tssr9526	transcription start site region 9526	88 bp downstream
Tssr9527	transcription start site region 9527	51 bp downstream
Tssr14335	transcription start site region 14335	345 bp upstream
Tssr14336	transcription start site region 14336	385 bp downstream
Tssr14337	transcription start site region 14337	1123 bp downstream
Tssr14338	transcription start site region 14338	1186 bp downstream
Tssr14339	transcription start site region 14339	1283 bp downstream