rs228704371 SNP Detail

Summary

• ID
  rs228704371
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:102474980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTGAC CCCTGAGCAG
  CAGGCCTGAG ATAGGGTAGA GAGGTTCTCC TTTGTGGGTC TCTCTCAGAA TAGTCAGACC
  TTCCGAGAGG CATCACCAGA ATGTACCAGC TTTTCCTGAG CAGGGGTCTC TGAGGATTCT
  GTGGGCTATC ACACCGGTAG CTCTTACAGG CTCTTACAGC TCTTACAGGC TGCTGAGGCT
  G
  CAGAGCCCAT GCAGCTGCCA TTAAGTTGTA CAGAAGTCAC CCTCGGCCAT TTTTGTATGA
  CTTCCCACTT CCAGGACTGT ATGGGAGCTC AATGTCGTTC CCACAAGGAC AATCCTCAAA
  GTGAGTCTCT GCTCAGAACC TAGTGGAGTG AACTTTGAAG GTACTAAAGG TGCCAAGCGA
  CCATTTGTCT CAAATTCCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387141247	MGP_WTSI_12_103746931	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228704371					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387141247	MGP_WTSI_12_103746931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:102474980 () rs orientation: forward

Symbol	Name	Function Class
Rr265893	regulatory region 265893	1547 bp distal
Rr265894	regulatory region 265894	1422 bp proximal