rs228704704 SNP Detail

Summary

• ID
  rs228704704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157405432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTATG CCAATGAGTT
  AGAAGGTCAC CAGTCTCTCT TGCTATTTCC TCAAACTTCC TAGTCCTGGT CATCACATTA
  CACACTCAGG TGCACAAAGC ACCTCAAAGT TCTTGAACCC TGACCTGCAG ATCCCCCAAG
  AAACCCTGAT TTTCAAATCA ATCACTGGCA CCTCCCTCTT CTGCAGGGAC TTTATAGTCT
  Y
  ATTCAGCACT AGGGAATTAC GGGGGAAAGT AGCACAGATT TTGGTGTGGC CTTGGCTTTT
  CCACCCAGCC AGGTTGCTTT TAGTTCCCTA CTAAGGTCCA GATGAGCCCC ATACACATCA
  GAGAGGCGGG ATTCCACAGG ACTTGGATGT GAAACCCATT CCAAGGCGCG GTCTTCCTTA
  GCAGGGTAGA TACAGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262068	MGP_WTSI_2_157389248	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228704704					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262068	MGP_WTSI_2_157389248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157405432 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12576	CpG island 12576	1813 bp distal
Gm56190	predicted gene, 56190	1065 bp upstream
Nnat	neuronatin	990 bp downstream
Rr568544	regulatory region 568544	130 bp distal
Tssr721	transcription start site region 721	1055 bp upstream
Tssr21274	transcription start site region 21274	1781 bp downstream
Tssr21275	transcription start site region 21275	1729 bp downstream
Tssr21276	transcription start site region 21276	1616 bp downstream
Tssr21277	transcription start site region 21277	1598 bp downstream
Tssr21278	transcription start site region 21278	1565 bp downstream
Tssr21279	transcription start site region 21279	1480 bp downstream
Tssr21280	transcription start site region 21280	1368 bp downstream
Tssr21281	transcription start site region 21281	1294 bp downstream
Tssr21282	transcription start site region 21282	1221 bp downstream
Tssr21283	transcription start site region 21283	1192 bp downstream
Tssr27185	transcription start site region 27185	1628 bp upstream
Tssr27186	transcription start site region 27186	1498 bp upstream