rs228706070 SNP Detail

Summary

• ID
  rs228706070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68470076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTTATT GTGAAGCCCG
  CATCTTTTGC AGATCCCTCC CTGATCTTGG AGATGGGGAC TCTGGATAAT ACTTAGATTG
  TAGGGTGTTT TCTGCCAGCC GGTCTCTTTT GCAGTACAGA GGATTAGTCT GAAGTTAAGA
  AACCCCGTCA CAGATTTCAG ATTGTCTCTC CCTGTGACAT GATACCCGCC CCCCCCCCAA
  R
  CCTGCATTTT CTGTCTATCC CTTTTCCTCC AGTCTCTCTG TTTCCTTGTC TCTGTCTGTC
  TCTGTCTCTC GGTGTGTGAG TGTGTCCAAA TCTCAGTAGA TCTTCTAGGC TCTGGCTTTT
  CCAAAGAAGT ATCAGGCACA CCGGTGAGCC ACTGTAGCGG AAAGACAAAG AACAGGGCAG
  ATCAAGTCAT TGAACTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325667703	CHEV_18_68496659	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228706070					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68470076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10187	CpG island 10187	423 bp proximal
Mc5r	melanocortin 5 receptor	499 bp upstream
Rr393851	regulatory region 393851	within coordinates
Tssr151786	transcription start site region 151786	499 bp upstream
Tssr151787	transcription start site region 151787	540 bp upstream