rs228712646 SNP Detail

Summary

• ID
  rs228712646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGTATT TCAAACTCTC
  TTTTTCCTTC ACCAGGGTTT GGTACCAGGC ACCATGTTGA TAGGCTCTTT GTGTTATTGT
  ATTGAATGAG ATGGCACACA GCTTGGTCAG AATTCTTAGA AATGATTCCA TTACTGGGAG
  AAACAATAAT TTGTGATAAA ATTACTCAGG TTTAAGTCAC TGCACCTTCA TCTAGATTGT
  Y
  AAAAAGTTCA GGGCCACTCC AGGGCACTTG AGGGTAAAGC AAGGTGGGAA GGGAGGGAAG
  TTGTAAAGAA AAAATCAAAT CAAATCAAAA CAAAACAAAA AACAGGTTTT AAGCCATCTC
  CAACTGATGG GTGCTTTCAG ATACCCTTCT TCTTAAACAT AGACAATCAC ATAGGCCTGT
  GTGGTGGCAG GCAGCTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357150144	MGP_WTSI_3_19086692	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228712646					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357150144	MGP_WTSI_3_19086692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1063 bp proximal
Mtfr1	mitochondrial fission regulator 1	635 bp upstream
Rr397614	regulatory region 397614	1294 bp upstream
Rr573951	regulatory region 573951	147 bp proximal
Rr573952	regulatory region 573952	928 bp proximal
Rr573953	regulatory region 573953	1429 bp proximal
Tssr28500	transcription start site region 28500	610 bp upstream
Tssr28501	transcription start site region 28501	629 bp upstream
Tssr28502	transcription start site region 28502	667 bp upstream
Tssr28503	transcription start site region 28503	674 bp upstream
Tssr28504	transcription start site region 28504	1393 bp upstream
Tssr28505	transcription start site region 28505	1407 bp upstream
Tssr28506	transcription start site region 28506	1420 bp upstream
Tssr28507	transcription start site region 28507	1522 bp upstream
Tssr28508	transcription start site region 28508	1534 bp upstream
Tssr28509	transcription start site region 28509	1596 bp upstream