rs228713800 SNP Detail

Summary

• ID
  rs228713800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149225836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATGAG ATTCCCGGGA
  AGATTCCAAT TCCTTGAGGT TCATGGTTCA ACCATTAGGC AAAGGGAGCA AATGTTTAGC
  ATCTCCTTAA GATATTGTCA TTCCTTTTTT TTAATTAGGT ATTTTCTTCA TTTACATTTC
  AAATGCTATC CCAAAAGTCC CCTAAACCCT CCCCCACCCA CCCCCCACCC CTGCCCTGCT
  Y
  CCCTACCCAC CCACTCCCAC TTCTTGGCCC TAGTGTTCCC CTGTACTGGG GCATATAAAG
  TTTGCAAGAC CAAGGGGCCT CTCTTCCCAG TGATGGCCGA AGATATTGTC ATTCTTACAT
  AAGGAAATAT CAGATTACTT AGGAACAGAA CTTGCTGTTT CCCAGAAGGA AAGTATATGA
  GCTCTGTCCT TGTCTGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
ss404871534	MGP_WTSI_X_146877383	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
rs228713800					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404871534	MGP_WTSI_X_146877383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149225836 () rs orientation: forward

Symbol	Name	Function Class
Tssr164356	transcription start site region 164356	1994 bp upstream
Tssr164357	transcription start site region 164357	1903 bp upstream
Tssr164358	transcription start site region 164358	1771 bp upstream
Vcf2	VCP nuclear cofactor family member 2	within coordinates