rs228714081 SNP Detail

Summary

• ID
  rs228714081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48046180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGGCGA CGGTGACACA
  GAGCGAGGAG TTGGTCTCCT CAACTTTGAA CCAGTTTTGA CTAGAGTTTC CTGAAGGATG
  CTGTATGCAT GTTTCTTTCT AACAGTTGTG GTCCTTGAGG AAGCAAGATG CTATTTCTAG
  GATGACACTG AGTAAGTCCC AGGATGTGTT GGAAGGAGGG CCGTCCCTCG GCTGTGGACC
  R
  CAGGGCCAGC TCTTTCCTAG GCTTTCTCTA ACCAGCTCAG TGAGAGGTGT GTCGCTCTAG
  ATTTCATTCT TAGGAGCGTC TTAGAAAGCC CCAGAAACTT GCAGTCACAT GATGAGGGGG
  TGGAGAGGAG CAAGAGAAGA GGGAGAAGAG GAAGAAAAGA AAGAGGAGAG AGAGGAGAGA
  GGAGAGAGGA GAGAAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353069	MGP_WTSI_17_47872204	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228714081					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353069	MGP_WTSI_17_47872204	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48046180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9270	CpG island 9270	1632 bp proximal
Pgc	progastricsin (pepsinogen C)	777 bp downstream
Rr405329	regulatory region 405329	1560 bp upstream
Rr528107	regulatory region 528107	1285 bp proximal
Rr528108	regulatory region 528108	1733 bp proximal
Rr528109	regulatory region 528109	1767 bp proximal
Tfeb	transcription factor EB	1782 bp upstream
Tssr145035	transcription start site region 145035	1500 bp downstream
Tssr145036	transcription start site region 145036	1471 bp downstream
Tssr145037	transcription start site region 145037	1444 bp downstream
Tssr145038	transcription start site region 145038	1425 bp downstream
Tssr145039	transcription start site region 145039	1054 bp downstream
Tssr145040	transcription start site region 145040	1020 bp downstream
Tssr145041	transcription start site region 145041	1008 bp downstream
Tssr145042	transcription start site region 145042	957 bp downstream
Tssr145043	transcription start site region 145043	931 bp downstream
Tssr145044	transcription start site region 145044	918 bp downstream
Tssr145045	transcription start site region 145045	901 bp downstream
Tssr145046	transcription start site region 145046	850 bp downstream
Tssr145047	transcription start site region 145047	834 bp downstream
Tssr145048	transcription start site region 145048	814 bp downstream
Tssr145049	transcription start site region 145049	1781 bp upstream
Tssr145050	transcription start site region 145050	1870 bp upstream
Tssr145051	transcription start site region 145051	1919 bp upstream
Tssr148478	transcription start site region 148478	1445 bp upstream
Tssr148479	transcription start site region 148479	1393 bp upstream
Tssr148480	transcription start site region 148480	927 bp upstream
Tssr148481	transcription start site region 148481	891 bp upstream
Tssr148482	transcription start site region 148482	774 bp upstream