rs228721086 SNP Detail

Summary

• ID
  rs228721086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70988002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACAGGT GCTCTGCCAC
  ACCTTGCCTC TGCTGTGTGA CTGCTGTCTG CTCTCTCTGC CTCTTTCTCT TTTGATAACC
  AGGAAAGGGT GAAGGTATCC TGCCTTCACA AAGTCAGCTC CACCTTGCAA GGACTCACAC
  CTTCTGTGCA CGCTCTGACC AGGCAAGTGA AAGTCCATGG AAACACTGCC ATTGGGATCC
  R
  GGACTGAGGC GCCAGGCATG AGAAGCCTGC CTGTGGCCTC AGGCACTAAG CTTGTCCTCT
  CTTCCTGAAT AGCGTTCTGT CTATAATGTT ATCATCTTGG ATAACACTTC GTTAGTGCAA
  TAAACGTGTC CCGAGTGGCA AGGCTCGATT GCTCAGCCTG CTCCATGCTA AGCAAGACAG
  TCAGAATTTG ATCCTTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417461	CHEV_13_70978761	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228721086					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70988002 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	1354 bp proximal
Gm36529	predicted gene, 36529	567 bp upstream
Rr482298	regulatory region 482298	within coordinates
Rr482299	regulatory region 482299	289 bp proximal
Rr482300	regulatory region 482300	483 bp proximal
Rr482301	regulatory region 482301	578 bp proximal
Rr482302	regulatory region 482302	806 bp proximal
Rr482303	regulatory region 482303	1839 bp proximal
Rr482304	regulatory region 482304	1918 bp proximal
Tssr123158	transcription start site region 123158	1820 bp downstream
Tssr123159	transcription start site region 123159	1846 bp downstream
Tssr123160	transcription start site region 123160	1879 bp downstream
Tssr123161	transcription start site region 123161	1907 bp downstream