rs228721663 SNP Detail

Summary

• ID
  rs228721663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97115675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGACC TGTTTTCAGG
  TTTCTTTTTT TTTTCTTTTT TTGTCATTCC GTGCTATAAC CCTCACTCAA TGAATTTTTA
  ATGTTACACA TTCACATGTT TTTTTCCCAG TTCTAAAATT TCTCCGTTTT AAGAATGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATATATATCA GCTGAGGCTG
  W
  CTGCACCTTC TTATTCAAAG AGGTCTTTGC CTCATGGGGA GTGTTTTTTT AACATTAAAA
  AAATGGCATT GTTTTACTTT TGCCAGCTGG CATGGGTTGC ATGTTGTGGT AGGTGTGCTG
  GGCTCAGTGC AGGTATGAGT GGGGTTGGGG AGGTGATGGC TTGGTGGTTG GAAGGGAAAG
  AAGAGGATTA GATGGGCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323117112	CHEV_9_97134041	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228721663					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97115675 () rs orientation: forward

Symbol	Name	Function Class
Gm29240	predicted gene 29240	193 bp downstream
Rr383804	regulatory region 383804	1994 bp upstream
Tssr2982	transcription start site region 2982	545 bp downstream