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rs228727490 SNP Detail
Summary
  • ID
    rs228727490
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385415 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCCCTCAAC CTCACTAGTT
CCTGCCCAGC CACGAAAGAA ACTGGCAACC CAGGCAACAC CTCGGGTCCT TCGATTATTT
TCTAAGTGAA ATAGTTTCAT GTTCCAAGTG AAGATTTTGC TTATATTTTC ATAGTTTCAC
ACCATATCTG TCCCCGACAA ATGTCAGCTG TTTAGTTATC AGTTCTAGGC ACATTGAACA
Y
GAAGACTTTT TCCATGAAAA AATCTTCAGT TACCAAAAGC TAAAACCCTC CCCTAGCACA
GACCCTGCAT TAACCCCCTT CACTCTGAAA ATGATTTAAT TATTCAAATC TCACTAATCT
CTGGGGTTCA GAGGATGGAC AGAAAGGAGG CATGCCAAGC AGAGAGGCCT GGGGTCTTTG
GTAAGTAGGC TGTTAGATAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552115 MGP_WTSI_19_44471466 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228727490 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552115 MGP_WTSI_19_44471466 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385415 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 179 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 29 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 137 bp proximal
Rr548237 regulatory region 548237 1558 bp distal
Rr548238 regulatory region 548238 within coordinates
Rr548239 regulatory region 548239 1738 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 612 bp upstream
Tssr156606 transcription start site region 156606 550 bp downstream
Tssr156607 transcription start site region 156607 229 bp downstream
Tssr156608 transcription start site region 156608 165 bp upstream
Tssr156609 transcription start site region 156609 375 bp upstream
Tssr159452 transcription start site region 159452 1731 bp upstream
Tssr159453 transcription start site region 159453 1662 bp upstream
Tssr159454 transcription start site region 159454 1643 bp upstream
Tssr159455 transcription start site region 159455 1337 bp upstream
Tssr159456 transcription start site region 159456 1218 bp upstream
Tssr159457 transcription start site region 159457 1189 bp upstream
Tssr159458 transcription start site region 159458 1155 bp upstream
Tssr159459 transcription start site region 159459 1063 bp upstream
Tssr159460 transcription start site region 159460 1027 bp upstream
Tssr159461 transcription start site region 159461 966 bp upstream
Tssr159462 transcription start site region 159462 934 bp upstream
Tssr159463 transcription start site region 159463 895 bp upstream
Tssr159464 transcription start site region 159464 865 bp upstream
Tssr159465 transcription start site region 159465 845 bp upstream
Tssr159466 transcription start site region 159466 827 bp upstream
Tssr159467 transcription start site region 159467 763 bp upstream
Tssr159468 transcription start site region 159468 517 bp upstream
Tssr159469 transcription start site region 159469 452 bp upstream
Tssr159470 transcription start site region 159470 438 bp upstream
Tssr159471 transcription start site region 159471 405 bp upstream
Tssr159472 transcription start site region 159472 379 bp upstream
Tssr159473 transcription start site region 159473 360 bp upstream
Tssr159474 transcription start site region 159474 338 bp upstream
Tssr159475 transcription start site region 159475 291 bp upstream
Tssr159476 transcription start site region 159476 273 bp upstream
Tssr159477 transcription start site region 159477 264 bp upstream
Tssr159478 transcription start site region 159478 243 bp upstream
Tssr159479 transcription start site region 159479 225 bp upstream
Tssr159480 transcription start site region 159480 193 bp upstream
Tssr159481 transcription start site region 159481 134 bp upstream
Tssr159482 transcription start site region 159482 46 bp upstream
Tssr159483 transcription start site region 159483 34 bp downstream
Tssr159484 transcription start site region 159484 68 bp downstream
Tssr159485 transcription start site region 159485 194 bp downstream
Tssr159486 transcription start site region 159486 201 bp downstream
Tssr159487 transcription start site region 159487 282 bp downstream
Tssr159488 transcription start site region 159488 299 bp downstream
Tssr159489 transcription start site region 159489 353 bp downstream
Tssr159490 transcription start site region 159490 455 bp downstream
Tssr159491 transcription start site region 159491 490 bp downstream
Tssr159492 transcription start site region 159492 541 bp downstream
Tssr159493 transcription start site region 159493 567 bp downstream
Tssr159494 transcription start site region 159494 587 bp downstream
Tssr159495 transcription start site region 159495 705 bp downstream
Tssr159496 transcription start site region 159496 775 bp downstream
Tssr159497 transcription start site region 159497 788 bp downstream
Tssr159498 transcription start site region 159498 800 bp downstream
Tssr159499 transcription start site region 159499 830 bp downstream
Tssr159500 transcription start site region 159500 861 bp downstream
Tssr159501 transcription start site region 159501 876 bp downstream
Tssr159502 transcription start site region 159502 912 bp downstream
Tssr159503 transcription start site region 159503 925 bp downstream
Tssr159504 transcription start site region 159504 1004 bp downstream
Tssr159505 transcription start site region 159505 1117 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory