rs228730422 SNP Detail

Summary

• ID
  rs228730422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45110720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTACGG CTCTGGAGTG
  GCTAGCCTAC ACGTATCTTT CTCCTGACTT GACGTCTGCG GTGGTCTGTT GATTTGGGGG
  TCAGAGTTAC TCATTAACCA CAGTGCTCCA GAACCTGACC TCTGGCCTTC AACCCGACAG
  GCCTGGACAA GGCTGTAAAG GTGGAAAAAG ATAAAACCCG GAAGCCACAG GGGACAAGGA
  R
  AGGAGAGAGG TACACAAATT TGAGTGGCAG AATCTCAGAC TGGGGGATTG AGGGTGGAAC
  AAAAGACCAA GTCCCCTTAA AATGGCTTCC TCTTCCCTTC TGGCACCTCT GGTAATCCAG
  CATCTAGGAG TCTGCTCCAG TTCCGGTGGC CTCCTCCCTC CCTCCCTCCC TCCCTCCCTC
  CCTCCCTCCC TCCCTCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177657	MGP_WTSI_7_52716666	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228730422					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177657	MGP_WTSI_7_52716666	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45110720 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	401 bp downstream
Cpgi19060	CpG island 19060	1866 bp distal
Cpgi19061	CpG island 19061	1162 bp distal
Ftl1	ferritin light polypeptide 1	1412 bp upstream
Gm10252	predicted gene 10252	996 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	within coordinates
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	922 bp distal
Rr646451	regulatory region 646451	1187 bp distal
Rr646452	regulatory region 646452	277 bp distal
Rr646453	regulatory region 646453	within coordinates
Rr646454	regulatory region 646454	157 bp proximal
Rr646455	regulatory region 646455	1743 bp proximal
Tssr66541	transcription start site region 66541	1608 bp downstream
Tssr66542	transcription start site region 66542	196 bp downstream
Tssr72395	transcription start site region 72395	1871 bp upstream
Tssr72396	transcription start site region 72396	1839 bp upstream
Tssr72397	transcription start site region 72397	1565 bp upstream
Tssr72398	transcription start site region 72398	1415 bp upstream
Tssr72399	transcription start site region 72399	350 bp upstream
Tssr72400	transcription start site region 72400	319 bp upstream