rs228732970 SNP Detail

Summary

• ID
  rs228732970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5742775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCAAA GAGTAACTGC
  ACCTCCAGAT ATTCTGCCTG CCTCTTTTCT CACAGGCCTA GCCTTTTGAG CTTTCGTTGC
  ATCTTTACCC TTCTCTTTTT TCTGTATCAT GTGTAATCAT TTTAAAATTC TGCCTTTATC
  TGTGCTCTGT TCCAGTGCTA AAGTACAATT ATGCTCATTC AATAGAAGAG CATTTTCCAT
  R
  GTACCAGTAC AATAAGAGTG ATTTCATGAA GCTCCTCATT CCCATCTTTC ACAATTAGCT
  AACTTATCAC TGCTGAAACT GCCCCCCAGC CCCAGCCCCA GCCAGCCCAC CCCGCCCAGA
  CTAGCTGAGA GGCAGAAACC GCAGTGAATG CCACCATCTC AGGAGCATCT CCAGGCAGCC
  TGATAGCTGC CCCGGTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363869330	MGP_WTSI_5_5692775	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228732970					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363869330	MGP_WTSI_5_5692775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5742775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	839 bp proximal
D5Mit417	DNA segment, Chr 5, Massachusetts Institute of Technology 417	410 bp distal
Gm40262	predicted gene, 40262	within coordinates
Rr607034	regulatory region 607034	672 bp proximal
Rr607035	regulatory region 607035	1267 bp proximal
Rr607036	regulatory region 607036	1793 bp proximal
Steap2	six transmembrane epithelial antigen of prostate 2	within coordinates
Tssr50064	transcription start site region 50064	1249 bp downstream
Tssr50065	transcription start site region 50065	1494 bp downstream
Tssr50066	transcription start site region 50066	1661 bp downstream
Tssr50067	transcription start site region 50067	1705 bp downstream
Tssr50068	transcription start site region 50068	1724 bp downstream
Tssr50069	transcription start site region 50069	1784 bp downstream