rs228733232 SNP Detail

Summary

• ID
  rs228733232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66208308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGATCG CTCCCTTTTC
  CCTGTTCCTG TGGGTATAGG AAGTTGGTGA GCCCAGATAA GCTATTCTGG GCAGCGTTGG
  AGATGCAAGG GGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTTTATGCA ACCAATCCAG CTTCTGGGAA AGGATCCATT GTGTAATACT GGGGCTTCAG
  Y
  CTGTGTCCCC TGGCTCAGGG CAGCCGGCCC AGTGGTGGCA GTGGCCCCTT GGCAGAGTAT
  GCTAGTTCAG GCTTAGAGGC AACAGGCATG TGAAAGGAAT TTGCTGGAGC CAATGGGCTT
  GTCCTCCTGA AAGGGCTTTC TGGGGCGGGG GGTGGGGGTG GGGATGGGGG CTCACTGCTA
  ATCTCAGGCT TTGTCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367320	MGP_WTSI_14_66589696	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228733232					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367320	MGP_WTSI_14_66589696	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66208308 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	1761 bp distal
Rr297400	regulatory region 297400	107 bp distal
Rr297401	regulatory region 297401	292 bp proximal
Tssr126247	transcription start site region 126247	1121 bp downstream
Tssr126248	transcription start site region 126248	1067 bp downstream
Tssr126249	transcription start site region 126249	1038 bp downstream
Tssr126250	transcription start site region 126250	325 bp downstream
Tssr126251	transcription start site region 126251	268 bp downstream
Tssr126252	transcription start site region 126252	250 bp downstream
Tssr126253	transcription start site region 126253	238 bp downstream
Tssr126254	transcription start site region 126254	204 bp downstream
Tssr126255	transcription start site region 126255	190 bp downstream
Tssr126256	transcription start site region 126256	25 bp upstream
Tssr126257	transcription start site region 126257	190 bp upstream
Tssr126258	transcription start site region 126258	254 bp upstream
Tssr126259	transcription start site region 126259	305 bp upstream
Tssr126260	transcription start site region 126260	867 bp upstream
Tssr126261	transcription start site region 126261	937 bp upstream
Tssr126262	transcription start site region 126262	958 bp upstream