About   Help   FAQ
rs228733713 SNP Detail
Summary
  • ID
    rs228733713
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129799 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCTTTCTTT GTTGTCTTCT
TCTTGAGATC TCTTTCACCC TTCCTTCTCC TACTTCTCTG GTGTCTTACT CCCCCCCCCC
CACACACACA CCTTCTCCTT ATCTCACCCT CTCCCTGCAT CTCCTCTTTC TCCAACTTCC
TGTCCTGTCT GCCTCTCTTC TTCATCCTAC TCACCCTCCT CCACTTCCAA CTGTTTTCTC
Y
TCAGCCCATC TCCTTTCTAG CTCCTTCTCT ATTCCTCATC TTCCTTTCTC TGTACCCTCT
TCCCCCACTT CCTCATCCTC TCCTCTCTTC CTTCTTGCCC TCATCTTTTC CTGCAGCTCC
AGTTCTCCCA TCATGTTTCT CTTGCTCTTC CTTCTCCATC CATCACTTTC CTCTTCCTTC
CAATTCTCAT TTCCTTCCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156137 MGP_WTSI_7_51735745 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228733713 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156137 MGP_WTSI_7_51735745 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129799 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1355 bp downstream
Tssr2228 transcription start site region 2228 292 bp downstream
Tssr2229 transcription start site region 2229 17 bp downstream
Tssr2230 transcription start site region 2230 158 bp upstream
Tssr2231 transcription start site region 2231 291 bp upstream
Tssr2232 transcription start site region 2232 466 bp upstream
Tssr2233 transcription start site region 2233 499 bp upstream
Tssr2234 transcription start site region 2234 658 bp upstream
Tssr2235 transcription start site region 2235 1292 bp upstream
Tssr66274 transcription start site region 66274 1997 bp downstream
Tssr66275 transcription start site region 66275 1977 bp downstream
Tssr66276 transcription start site region 66276 1957 bp downstream
Tssr66277 transcription start site region 66277 1937 bp downstream
Tssr66278 transcription start site region 66278 1893 bp downstream
Tssr66279 transcription start site region 66279 1848 bp downstream
Tssr66280 transcription start site region 66280 1826 bp downstream
Tssr66281 transcription start site region 66281 1786 bp downstream
Tssr66282 transcription start site region 66282 1769 bp downstream
Tssr66283 transcription start site region 66283 1755 bp downstream
Tssr66284 transcription start site region 66284 1743 bp downstream
Tssr66285 transcription start site region 66285 1729 bp downstream
Tssr66286 transcription start site region 66286 1690 bp downstream
Tssr66287 transcription start site region 66287 1654 bp downstream
Tssr66288 transcription start site region 66288 1629 bp downstream
Tssr66289 transcription start site region 66289 1547 bp downstream
Tssr66290 transcription start site region 66290 1509 bp downstream
Tssr66291 transcription start site region 66291 1483 bp downstream
Tssr66292 transcription start site region 66292 1451 bp downstream
Tssr66293 transcription start site region 66293 1429 bp downstream
Tssr66294 transcription start site region 66294 1405 bp downstream
Tssr66295 transcription start site region 66295 1140 bp downstream
Tssr66296 transcription start site region 66296 969 bp downstream
Tssr66297 transcription start site region 66297 945 bp downstream
Tssr66298 transcription start site region 66298 890 bp downstream
Tssr66299 transcription start site region 66299 870 bp downstream
Tssr66300 transcription start site region 66300 847 bp downstream
Tssr66301 transcription start site region 66301 831 bp downstream
Tssr66302 transcription start site region 66302 790 bp downstream
Tssr66303 transcription start site region 66303 781 bp downstream
Tssr66304 transcription start site region 66304 776 bp downstream
Tssr66305 transcription start site region 66305 737 bp downstream
Tssr66306 transcription start site region 66306 683 bp downstream
Tssr66307 transcription start site region 66307 634 bp downstream
Tssr66308 transcription start site region 66308 617 bp downstream
Tssr66309 transcription start site region 66309 567 bp downstream
Tssr66310 transcription start site region 66310 498 bp downstream
Tssr66311 transcription start site region 66311 475 bp downstream
Tssr66312 transcription start site region 66312 456 bp downstream
Tssr66313 transcription start site region 66313 446 bp downstream
Tssr66314 transcription start site region 66314 428 bp downstream
Tssr66315 transcription start site region 66315 421 bp downstream
Tssr66316 transcription start site region 66316 356 bp downstream
Tssr66317 transcription start site region 66317 340 bp downstream
Tssr66318 transcription start site region 66318 299 bp downstream
Tssr66319 transcription start site region 66319 271 bp downstream
Tssr66320 transcription start site region 66320 247 bp downstream
Tssr66321 transcription start site region 66321 223 bp downstream
Tssr66322 transcription start site region 66322 207 bp downstream
Tssr66323 transcription start site region 66323 169 bp downstream
Tssr66324 transcription start site region 66324 116 bp downstream
Tssr66325 transcription start site region 66325 75 bp downstream
Tssr66326 transcription start site region 66326 65 bp downstream
Tssr66327 transcription start site region 66327 45 bp downstream
Tssr66328 transcription start site region 66328 27 bp downstream
Tssr66329 transcription start site region 66329 within coordinates
Tssr66330 transcription start site region 66330 14 bp upstream
Tssr66331 transcription start site region 66331 28 bp upstream
Tssr66332 transcription start site region 66332 49 bp upstream
Tssr66333 transcription start site region 66333 97 bp upstream
Tssr66334 transcription start site region 66334 109 bp upstream
Tssr66335 transcription start site region 66335 118 bp upstream
Tssr66336 transcription start site region 66336 127 bp upstream
Tssr66337 transcription start site region 66337 145 bp upstream
Tssr66338 transcription start site region 66338 201 bp upstream
Tssr66339 transcription start site region 66339 252 bp upstream
Tssr66340 transcription start site region 66340 297 bp upstream
Tssr66341 transcription start site region 66341 342 bp upstream
Tssr66342 transcription start site region 66342 404 bp upstream
Tssr66343 transcription start site region 66343 436 bp upstream
Tssr66344 transcription start site region 66344 581 bp upstream
Tssr66345 transcription start site region 66345 614 bp upstream
Tssr66346 transcription start site region 66346 670 bp upstream
Tssr66347 transcription start site region 66347 708 bp upstream
Tssr66348 transcription start site region 66348 749 bp upstream
Tssr66349 transcription start site region 66349 773 bp upstream
Tssr66350 transcription start site region 66350 801 bp upstream
Tssr66351 transcription start site region 66351 809 bp upstream
Tssr66352 transcription start site region 66352 845 bp upstream
Tssr66353 transcription start site region 66353 919 bp upstream
Tssr66354 transcription start site region 66354 933 bp upstream
Tssr66355 transcription start site region 66355 960 bp upstream
Tssr66356 transcription start site region 66356 977 bp upstream
Tssr66357 transcription start site region 66357 991 bp upstream
Tssr66358 transcription start site region 66358 1003 bp upstream
Tssr66359 transcription start site region 66359 1029 bp upstream
Tssr66360 transcription start site region 66360 1041 bp upstream
Tssr66361 transcription start site region 66361 1067 bp upstream
Tssr66362 transcription start site region 66362 1099 bp upstream
Tssr66363 transcription start site region 66363 1116 bp upstream
Tssr66364 transcription start site region 66364 1149 bp upstream
Tssr66365 transcription start site region 66365 1169 bp upstream
Tssr66366 transcription start site region 66366 1189 bp upstream
Tssr66367 transcription start site region 66367 1217 bp upstream
Tssr66368 transcription start site region 66368 1239 bp upstream
Tssr66369 transcription start site region 66369 1273 bp upstream
Tssr66370 transcription start site region 66370 1315 bp upstream
Tssr66371 transcription start site region 66371 1740 bp upstream
Tssr66372 transcription start site region 66372 1903 bp upstream
Tssr72200 transcription start site region 72200 1934 bp upstream
Tssr72201 transcription start site region 72201 1424 bp upstream
Tssr72202 transcription start site region 72202 567 bp upstream
Tssr72203 transcription start site region 72203 187 bp upstream
Tssr72204 transcription start site region 72204 400 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory