rs228734955 SNP Detail

Summary

• ID
  rs228734955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAACCTCA TGTCTTGATG
  GGTCTGACAG AGCGAGAGAA CTGAGTGTGA CCCACAGGGC CCTGGCACCC TGCCCAGCTG
  TGCACTTTGC TCGCTCACCC GCTCACCCAC CCGCTCTGCC TGAGAGTCAT GACTGTTCTG
  TGCCATGTGA GCCAGATCTT TGGCTCTCTA TCACACCATC CCTTGCTCTC TGGGCTAATC
  Y
  CCTGGGGAGT TCCTGATGAA TTCCCCGCCT CCCCCCCAGC TCCCTGTGTT TTCATCTTGT
  TCTTGCTGTT GTCTGGATCA GGAGGGCGGG GAGGGTGGAC TCCCTGAGAC AAGACAAGCA
  GGTAGAGACA GATTAGAGGG AGGGATTGTC ATAGTAACAT TTTCCGAGGT GACAGAGATG
  ATACACAGGC AGCTGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391466510	MGP_WTSI_14_70868123	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228734955					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391466510	MGP_WTSI_14_70868123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1031 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	756 bp distal
Rr290303	regulatory region 290303	1645 bp proximal
Rr404191	regulatory region 404191	1999 bp upstream
Tssr4470	transcription start site region 4470	1695 bp downstream
Tssr126423	transcription start site region 126423	1849 bp downstream
Tssr126424	transcription start site region 126424	1775 bp downstream
Tssr126425	transcription start site region 126425	1719 bp downstream
Tssr126426	transcription start site region 126426	1583 bp downstream
Tssr126427	transcription start site region 126427	1468 bp downstream
Tssr126428	transcription start site region 126428	1456 bp downstream
Tssr126429	transcription start site region 126429	697 bp downstream
Tssr126430	transcription start site region 126430	629 bp downstream
Tssr126431	transcription start site region 126431	471 bp downstream
Tssr126432	transcription start site region 126432	433 bp downstream