rs228735624 SNP Detail

Summary

• ID
  rs228735624
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:104080074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTCCT GAAAACCATG
  TTTTCCAAAG TTACCTTACC CATGAATCAT CTGTACACCC AAGATGCAAA CTCTGTTTGG
  GGCAGATTTG CACTCCTCAC AAACTCCCAG ACGATATTCA TGATCCCACT TTGGGGACCA
  TACTTTTAAG AGGTTGTGCC TAGAAAGACT GACTTCCAGG CTTGTGATTC CCAACTGTTA
  M
  ATGTTGTCAT AGTTACAAAG GATTTTTAAA ATGTATCACT GCTGTCATCT TCACCAGAGC
  TTCTGATTCA GTGACCCTGG GTCAGGGAAT CTGAATTCTT CTTTCCTAAC AGATCTCCAA
  TAGTAACAAT GTCACTACCT GGAAAGCTAC ACTTGTCAGA GGCTAAGAAA ACCCGCAGGA
  AAATCTCGTT CAAATTCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392314119	MGP_WTSI_14_104241855	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228735624					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392314119	MGP_WTSI_14_104241855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:104080074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6819	CpG island 6819	367 bp proximal
Ednrb	endothelin receptor type B	within coordinates
Gm35197	predicted gene, 35197	within coordinates
Rr407	regulatory region 407	1455 bp proximal
Rr390089	regulatory region 390089	1373 bp upstream
Rr497067	regulatory region 497067	1026 bp proximal
Rr497068	regulatory region 497068	1047 bp proximal
Rr497069	regulatory region 497069	1754 bp proximal
Tssr130119	transcription start site region 130119	420 bp downstream
Tssr130120	transcription start site region 130120	500 bp downstream
Tssr130121	transcription start site region 130121	835 bp downstream
Tssr130122	transcription start site region 130122	902 bp downstream
Tssr130123	transcription start site region 130123	956 bp downstream
Tssr130124	transcription start site region 130124	988 bp downstream
Tssr130125	transcription start site region 130125	1047 bp downstream
Tssr130126	transcription start site region 130126	1072 bp downstream
Tssr130127	transcription start site region 130127	1183 bp downstream
Tssr130128	transcription start site region 130128	1528 bp downstream
Tssr130129	transcription start site region 130129	1549 bp downstream
Tssr130130	transcription start site region 130130	1570 bp downstream
Tssr130131	transcription start site region 130131	1597 bp downstream
Tssr130132	transcription start site region 130132	1608 bp downstream
Tssr130133	transcription start site region 130133	1630 bp downstream
Tssr130134	transcription start site region 130134	1662 bp downstream
Tssr130135	transcription start site region 130135	1676 bp downstream
Tssr130136	transcription start site region 130136	1706 bp downstream
Tssr130137	transcription start site region 130137	1753 bp downstream
Tssr130138	transcription start site region 130138	1782 bp downstream
Tssr130139	transcription start site region 130139	1810 bp downstream