rs228735977 SNP Detail

Summary

• ID
  rs228735977
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTAGCTC TGGCTTAGCT
  CGGAACTCAC GTTGTGGACC CAGGCTGGCC ATTCTGGGAT GCTGCTTCTG CCCTACCTCA
  GCTTCATTTG TTTTCTCGGG GGGGGGGGGG GGCACCCTAA TATAACTTAC ATGACTTCAA
  AGCAGAGATC AAGTCCTAAA TATTCCAGTT TATCAAAAAT AGTTTTCTCG GGAGCTGGAG
  M
  TATGGCTCAG CGGTTAAGAG CACTGACTGC TCTTCCAGAG GTCCTGAGTT CAATTCCCAG
  TAACCACATG GTGGCTCACA GCCATCTGTA ATGGGATCTG ATGCCCTCTT CTGGTGTGTC
  TGAAGACAGC TACAGTATAC TCATATAAAT AATAAATAAA TAAAACCTTT AAAAAAATTA
  GTTTTCTCGG GCTGGCGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494031	CHEV_10_116501511	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228735977					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900360 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	641 bp upstream
Cpgi2223	CpG island 2223	417 bp distal
Rr402250	regulatory region 402250	422 bp downstream
Rr439433	regulatory region 439433	151 bp distal
Rr439434	regulatory region 439434	98 bp proximal
Rr439435	regulatory region 439435	296 bp proximal
Rr439436	regulatory region 439436	669 bp proximal
Tssr99381	transcription start site region 99381	1397 bp upstream
Tssr99382	transcription start site region 99382	1089 bp upstream
Tssr99383	transcription start site region 99383	703 bp upstream
Tssr99384	transcription start site region 99384	653 bp upstream