rs228736892 SNP Detail

Summary

• ID
  rs228736892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:53518579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGCTGG GAAGGTGCTG
  CGGGCGGTGC TCCCTAATAG TTCCGGGGGC CCAGAGCTCA TGCTGGTCAT TGGCGCCGTT
  GGCAGGCCAC GGGGGTCGGA ACCTTTCTGT ACAGATCAGC GCGATCAAAC AAGTTGAGAC
  CCTCCCCCAG GAGAGTGGCG CCGCGGTGTC CCCTTTCTTC CCGCCTAGAC AATTAGAGCA
  Y
  GTTAGGCTGT GTCTTGGTGG GCCTCTTGCC TTTTTGACCC TGGCAAGTCC CTCCCCTTCC
  TCTCCCTTTA TTGCTTTTTA TTGTTATCCT CCAGCCTCCT CCTCCTCCTC TCCCCAAATA
  GGCCGTTCTC AAGCTTAATT TGGGAACTGA CAGCTTTCCC ACCCCTTTCA TCCTGTCATC
  CCCAGCAGGG GATTATCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402792283	MGP_WTSI_19_53604638	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228736892					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402792283	MGP_WTSI_19_53604638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53518579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11064	CpG island 11064	within coordinates
Dusp5	dual specificity phosphatase 5	Intron
Gm50394	predicted gene, 50394	493 bp upstream
Rr370535	regulatory region 370535	1001 bp downstream
Rr549545	regulatory region 549545	1029 bp distal
Rr549546	regulatory region 549546	1090 bp distal
Rr549547	regulatory region 549547	831 bp distal
Rr549548	regulatory region 549548	769 bp distal
Rr549549	regulatory region 549549	3 bp distal
Rr549550	regulatory region 549550	998 bp proximal
Tssr156985	transcription start site region 156985	1043 bp downstream
Tssr156986	transcription start site region 156986	997 bp downstream
Tssr159828	transcription start site region 159828	1267 bp upstream
Tssr159829	transcription start site region 159829	1239 bp upstream
Tssr159830	transcription start site region 159830	1159 bp upstream